Mikala Caton
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Activity overview
Latest activity by Mikala Caton-
Mikala Caton created an article,
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Mikala Caton created an article,
Applying the mutation report to disease surveillance work
Overview Identifying and tracking the mutations in your samples can help you understand the phenotypic impact of mutations circulating in your community. Depending on the pathogen of interest, the ...
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Mikala Caton created a post,
2023 CZ GEN EPI Office Hours
On the first Thursday of each month, we will be hosting office hours at 9AM PST. Note the exception for the months of March and May. Join the zoom meeting to ask any questions you may have about CZ...
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Mikala Caton created a post,
2022 CZ Gen Epi Office Hours
On the first Thursday of each month, we will be hosting office hours at 9AM PST. Join the zoom meeting to ask any questions you may have about CZ GEN EPI. This time is for you! Provide feedback on...
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Mikala Caton created an article,
Session 2, Episode 7
In today's seminar, Dr. Shirlee Wohl joined us to discuss her work in developing a framework for estimating how many samples you should sequence to detect a variant at a particular frequency or ac...
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Mikala Caton created an article,
Season 2, Episode 6
Today’s seminar is Part 2 of the two part series discussing how to develop a new amplicon-based sequencing protocol. In Part 2, we focus on how to test and troubleshoot the candidate primers gener...
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Mikala Caton created an article,
Season 2, Episode 5
Today’s seminar is Part 1 of the two part series discussing how to develop a new amplicon-based sequencing protocol. In Part 1, we focus on using a tool called PrimalScheme to design multiplex amp...
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Mikala Caton created an article,
Season 2, Episode 4
Given the emergence of a new Monkeypox epidemic in non-endemic countries, in this week’s seminar we discuss the potential for, and challenges with, performing genomic surveillance and genomic epid...
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Mikala Caton created an article,
Season 2, Episode 3
This week we discuss why within genomic epidemiology we emphasize sequencing whole genomes rather than specific genes or partial fragments of the genome. Today’s material comes from Dudas and Bedf...
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Mikala Caton created an article,
Season 2, Episode 2
This week we talked about three important processes that can make samples appear to have mixed strains: coinfection, contamination, and recombination. We discussed what these signals can look like...